journal articles

Scalable biologically-aware skeleton generation for connectomic volumes

Matejek B, Franzmeyer T, Wei D, Wang X, Zhao J, Palágyi K, Lichtman JW, Pfister H.

IEEE Transactions on Medical Imaging (2022)

An acute functional screen identifies an effective antibody targeting amyloid-β oligomers based on calcium imaging

Wang X, Kastanenka KV, Arbel-Ornath M, Commins C, Kuzuya A, Lariviere AJ, Krafft GA, Hefti F, Jerecic J, Bacskai BJ.

Scientific Reports (2018)

Functional interactions between mammalian respiratory rhythmogenic and premotor circuitry

Song H, Hayes JA, Vann NC, Wang X, LaMar MD, Del Negro CA.

Journal of Neuroscience (2016)

Matrix metalloproteinase 9-mediated intracerebral hemorrhage induced by cerebral amyloid angiopathy

Zhao L, Arbel-Ornath M, Wang X, Betensky RA, Greenberg SM, Frosch MP, Bacskai BJ.

Neurobiology of Aging (2015)

Laser ablation of Dbx1 neurons in the pre-Bötzinger complex stops inspiratory rhythm and impairs output in neonatal mice

Wang X*, Hayes JA*, Revill AL, Song H, Kottick A, Vann NC, LaMar MD, Picardo MC, Akins VT, Funk GD, Del Negro CA. (*co-first authors)

eLife (2014)

Automated cell-specific laser detection and ablation of neural circuits in neonatal brain tissue

Wang X*, Hayes JA*, Picardo MC, Del Negro CA. (*co-first authors)

Journal of Physiology (2013)

Cumulative lesioning of respiratory interneurons disrupts and precludes motor rhythms in vitro

Hayes JA*, Wang X*, Del Negro CA. (*co-first authors)

Proc Natl Acad Sci USA (2012)

conference papers

AxonEM dataset: 3D axon instance segmentation of brain cortical regions

Wei D, Lee K, Li H, Lu R, Bae JA, Liu Z, Zhang L, dos Santos M, Lin Z, Uram T, Wang X, Carreras IA, Matejek B, Kasthuri N, Lichtman JW, Pfister H.

Medical Image Computing and Computer Assisted Intervention (MICCAI 2021)

NucMM dataset: 3D neuronal nuclei instance segmentation at sub-cubic millimeter scale

Lin Z, Wei D, Petkova M, Wu Y, Ahmed Z, Swaroop KK, Zou S, Wendt N, Boulanger-Weill J, Wang X, Dhanyasi N, Carreras IA, Engert F, Lichtman JW, Pfister H.

Medical Image Computing and Computer Assisted Intervention (MICCAI 2021)

VICE: visual identification and correction of neural circuit errors

Gonda F, Wang X, Beyer J, Hadwiger M, Lichtman JW, Pfister H.

Proceedings Eurographics/IEEE Symposium on Visualization (EuroVis 2021)

Two-stream active query suggestion for large-scale object detection in connectomics

Lin Z, Wei D, Jang WD, Zhou S, Chen X, Wang X, Schalek RL, Berger DR, Peleg A, Matejek B, Kamentsky L, Parag T, Jones T, Haehn D, Lichtman JW, Pfister H.

Proceedings of the European Conference on Computer Vision (ECCV 2020)

MitoEM dataset: large-scale 3D mitochondria instance segmentation from EM images

Wei D, Lin Z, Barranco DF, Wendt N, Liu X, Yin W, Huang X, Gupta A, Jang WD, Wang X, Carrerqs IA, Lichtman JW, Pfister H.

Medical Image Computing and Computer Assisted Intervention (MICCAI 2020)

A topological nomenclature for 3D shape analysis in connectomics

Talwar A, Lin Z, Wei D, Wu Y, Zhao J, Zheng B, Jang WD, Wang X, Lichtman JW, Pfister H.

IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRw 2020)

Synapse-aware skeleton generation for neuronal circuits

Matejek B, Wei D, Wang X, Zhao J, Palagyi K, Pfister H.

Medical Image Computing and Computer Assisted Intervention (MICCAI 2019)

book chapters

challenges/workshops organized

Organizing committee: Donglai Wei, Xueying Wang, Daniel Franco-Barranco, Zudi Lin, Wenjie Yin, Won-Dong Jang, Ignacio Arganda-Carreras, Jeff W. Lichtman, Hanspeter Pfister. (ISBI 2021 Challenges)