journal articles
Scalable biologically-aware skeleton generation for connectomic volumes
Matejek B, Franzmeyer T, Wei D, Wang X, Zhao J, Palágyi K, Lichtman JW, Pfister H.
An acute functional screen identifies an effective antibody targeting amyloid-β oligomers based on calcium imaging
Wang X, Kastanenka KV, Arbel-Ornath M, Commins C, Kuzuya A, Lariviere AJ, Krafft GA, Hefti F, Jerecic J, Bacskai BJ.
Functional interactions between mammalian respiratory rhythmogenic and premotor circuitry
Song H, Hayes JA, Vann NC, Wang X, LaMar MD, Del Negro CA.
Matrix metalloproteinase 9-mediated intracerebral hemorrhage induced by cerebral amyloid angiopathy
Zhao L, Arbel-Ornath M, Wang X, Betensky RA, Greenberg SM, Frosch MP, Bacskai BJ.
Laser ablation of Dbx1 neurons in the pre-Bötzinger complex stops inspiratory rhythm and impairs output in neonatal mice
Wang X*, Hayes JA*, Revill AL, Song H, Kottick A, Vann NC, LaMar MD, Picardo MC, Akins VT, Funk GD, Del Negro CA. (*co-first authors)
Automated cell-specific laser detection and ablation of neural circuits in neonatal brain tissue
Wang X*, Hayes JA*, Picardo MC, Del Negro CA. (*co-first authors)
Cumulative lesioning of respiratory interneurons disrupts and precludes motor rhythms in vitro
Hayes JA*, Wang X*, Del Negro CA. (*co-first authors)
conference papers
AxonEM dataset: 3D axon instance segmentation of brain cortical regions
Wei D, Lee K, Li H, Lu R, Bae JA, Liu Z, Zhang L, dos Santos M, Lin Z, Uram T, Wang X, Carreras IA, Matejek B, Kasthuri N, Lichtman JW, Pfister H.
Medical Image Computing and Computer Assisted Intervention (MICCAI 2021)
NucMM dataset: 3D neuronal nuclei instance segmentation at sub-cubic millimeter scale
Lin Z, Wei D, Petkova M, Wu Y, Ahmed Z, Swaroop KK, Zou S, Wendt N, Boulanger-Weill J, Wang X, Dhanyasi N, Carreras IA, Engert F, Lichtman JW, Pfister H.
Medical Image Computing and Computer Assisted Intervention (MICCAI 2021)
VICE: visual identification and correction of neural circuit errors
Gonda F, Wang X, Beyer J, Hadwiger M, Lichtman JW, Pfister H.
Proceedings Eurographics/IEEE Symposium on Visualization (EuroVis 2021)
Two-stream active query suggestion for large-scale object detection in connectomics
Lin Z, Wei D, Jang WD, Zhou S, Chen X, Wang X, Schalek RL, Berger DR, Peleg A, Matejek B, Kamentsky L, Parag T, Jones T, Haehn D, Lichtman JW, Pfister H.
Proceedings of the European Conference on Computer Vision (ECCV 2020)
MitoEM dataset: large-scale 3D mitochondria instance segmentation from EM images
Wei D, Lin Z, Barranco DF, Wendt N, Liu X, Yin W, Huang X, Gupta A, Jang WD, Wang X, Carrerqs IA, Lichtman JW, Pfister H.
Medical Image Computing and Computer Assisted Intervention (MICCAI 2020)
A topological nomenclature for 3D shape analysis in connectomics
Talwar A, Lin Z, Wei D, Wu Y, Zhao J, Zheng B, Jang WD, Wang X, Lichtman JW, Pfister H.
IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRw 2020)
Synapse-aware skeleton generation for neuronal circuits
Matejek B, Wei D, Wang X, Zhao J, Palagyi K, Pfister H.
Medical Image Computing and Computer Assisted Intervention (MICCAI 2019)
book chapters
Wang X, Arbel-Ornath M, Wegmann SK, Kastanenka KV, Bacskai BJ. (2014) Chapter 3: In Vivo Imaging in Neurodegenerative Diseases. In: Weigert R, editor. Advances in Intravital Microscopy: From Basic to Clinical Research. Dordrecht, Netherlands: Springer Netherlands; p. 45-80.
challenges/workshops organized
Organizing committee: Donglai Wei, Xueying Wang, Daniel Franco-Barranco, Zudi Lin, Wenjie Yin, Won-Dong Jang, Ignacio Arganda-Carreras, Jeff W. Lichtman, Hanspeter Pfister. (ISBI 2021 Challenges)
editorial
Research Topic Editors: Xueying Wang and Corrado Calì